PPDB

 The Plant Proteome Database

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AT1G68730.1   Zim17-type zinc finger protein
Lab Annot. zinc finger (DNL type) protein (homologue of maize pTAC Etched1)
Mapman: 27.3.67 RNA.regulation of transcription.putative transcription regulator
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G27280.1 11Arabidopsis thaliana2E-1867566510 (5)C
AT3G54826.1 11Arabidopsis thaliana1E-065437531 (1)C
Os01g42050.1 7Oryza sativa3E-317663800 (0)_
Os06g50870.1 7Oryza sativa8E-187057621 (1)C
Os02g57430.1 7Oryza sativa3E-085438570 (0)M
v1_GRMZM2G157574_P02 4a53Zea mays9E-357671840 (0)_
v1_GRMZM2G157574_P03 4a53Zea mays9E-357671840 (0)_
GRMZM2G157574_P02 3.21Zea mays9E-357671841 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: E7(2) HypA(1) TFIIS_C(2) zf-DNL(1)
TargetP: Chloroplast (Class 3 C0.786; M0.029; S0.013; _0.255)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 170 aa (-cTP 123)
Molecular Weight 19.16 kDA(-cTP 13.90)
PI 9.08(-cTP 7.91)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1455Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1456Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1457Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1459Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 2)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 19888209(leaves)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help