PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G68530.1 3-ketoacyl-CoA synthase 6

Lab Annot.

CUT1 (CUTICULAR 1); acyltransferase/ catalytic
Mapman: 16.7 secondary metabolism.wax

Curated Location

peroxisome (Pubmed: 21487095 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G25450.1 11 Arabidopsis thaliana 0 492 88 95 1 (1) S
AT1G68530.2 11 Arabidopsis thaliana 0 349 100 100 1 (1) _
AT2G16280.1 11 Arabidopsis thaliana 0 484 63 80 0 (0) _
Os03g12030.1 7 Oryza sativa 0 489 78 90 21 (21) M
Os05g49290.2 7 Oryza sativa 0 484 64 80 0 (0) _
Os05g49290.3 7 Oryza sativa 0 484 64 80 0 (0) _
Zm00001eb008920_P001 agpv5 Zea mays 0 489 77 89 0 (0) _
v1_GRMZM2G164974_P01 4a53 Zea mays 0 489 77 89 8 (8) _
GRMZM2G164974_P01 3.21 Zea mays 0 489 77 89 13 (13) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ACP_syn_III_C(2) Chal_sti_synt_C(1) Chal_sti_synt_N(1) FAE1_CUT1_RppA(1) TcpE(1)
TargetP:	Cytoplasm (Class 4 C0.005; M0.140; S0.384; _0.672)
Predotar:
Subcel. Location:
TM-HMM prediction:	2 TMs
Aramemnon:	2 TMs
TAT position:
Length	497 aa (-cTP 459)
Molecular Weight	56.40 kDA(-cTP )
PI	9.08(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
2245	Detail								seedlings [A. thaliana]	total tissue	wild-type
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2247	Detail								seedlings [A. thaliana]	total tissue	atg5

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
19292762(Ubiquitin-affinity seedling (10 d))

Comparative Proteomics Data