PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G67840.1   chloroplast sensor kinase
Lab Annot. chloroplast sensor kinase protein (CSK) - interacts with CK2acp (AT2G23070)
Mapman: 29.4.1 protein.postranslational modification.kinase
Curated Location plastid stroma (Pubmed: 23198870 18632566 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G67840.2 11Arabidopsis thaliana04391001007 (4)C
Os12g19530.2 7Oryza sativa7E-11337152670 (0)M
Os12g19530.1 7Oryza sativa7E-11337152670 (0)M
Zm00001eb319330_P002 agpv5Zea mays061451640 (0)M
GRMZM2G065461_P01 3.21Zea mays061451640 (0)M
v1_GRMZM2G065461_P01 4a53Zea mays061451640 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: HATPase_c(1) HisKA(1) MIS13(1) SMBP(1) Syntaxin-6_N(1) tRNA-synt_1b(1)
TargetP: Chloroplast (Class 1 C0.979; M0.033; S0.008; _0.015)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 611 aa (-cTP 532)
Molecular Weight 66.84 kDA(-cTP 58.62)
PI 5.40(-cTP 5.29)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1465Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 1)
1467Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1526Detail       leaf [A. thaliana] co-IP GST-ClpS 100ug bait stromaclpc1 x clps (rep. 2)
1527Detail       leaf [A. thaliana] co-IP GST-ClpS 10ug bait stromaclpc1 x clps (rep. 2)
1723Detail        [A. thaliana]  
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2002Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2114Detail       leaf [A. thaliana] Stroma stromawt

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help