PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G67740.1   photosystem II BY

Lab Annot. psbY1+2
Mapman: 1.1.1.2 PS.lightreaction.photosystem II.PSII polypeptide subunits
Curated Location thylakoid-integral (Pubmed: 23198870 18431481 )

TAIR curated location: chloroplast stromal thylakoid9933598
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os08g02630.1 7Oryza sativa2E-3211462710 (0)C
GRMZM2G134130_P01 3.21Zea mays4E-2611358720 (0)C
Zm00001eb261260_P001 agpv5Zea mays4E-2611358720 (0)C
v1_GRMZM2G134130_P02 4a53Zea mays4E-2611358720 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: MscS_TM(2) PsbY(3)
TargetP: Chloroplast (Class 2 C0.871; M0.023; S0.025; _0.139)
Predotar:
Subcel. Location: Thylakoid membrane
TM-HMM prediction: 2 TMs
Aramemnon: 4 TMs
TAT position:
Length 189 aa (-cTP 139) (-lTP 123)
Molecular Weight 19.46 kDA(-cTP 14.30)(-lTP 12.74)
PI 9.56(-cTP 6.43)(-lTP 8.221)

Experimental Evidence

Expand

 

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
39Detail       leaf [A. thaliana] plastid thylakoid membranewild-type
101Detail       leaf [A. thaliana] plastid thylakoid membranewild-type

* For details about the exprimental sources click here.

Published Proteomics Data

14729914(thylakoid stripped)
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help