PPDB

PPDB	The Plant Proteome Database

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AT1G67680.1 SRP72 RNA-binding domain-containing protein

Lab Annot.

7S RNA binding
Mapman: 29.3.4.99 protein.targeting.secretory pathway.unspecified

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G67650.1 11 Arabidopsis thaliana 0 654 85 89 2 (1) _
Os01g66560.1 7 Oryza sativa 0 684 55 72 24 (24) S
Zm00001eb145240_P002 agpv5 Zea mays 0 683 54 69 0 (0) _
GRMZM2G070562_P01 3.21 Zea mays 0 685 52 68 29 (29) _
v1_GRMZM2G439400_P01 4a53 Zea mays 1E-170 547 56 72 34 (34) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ANAPC3(4) Glyco_transf_20(1) HrpB1_HrpK(3) PPR(2) RPN7(2) SRP_TPR_like(1) SRP72(
TargetP:	Cytoplasm (Class 3 C0.250; M0.075; S0.106; _0.832)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	664 aa (-cTP 660)
Molecular Weight	73.07 kDA(-cTP )
PI	8.92(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1397	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1530	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	wild-type (rep. 1)
1531	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	wild-type (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1758	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag+fosmidomycin
1931	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
1932	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
2008	Detail								leaf [A. thaliana]	RNAi PG plastoglobule	RNAi
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2290	Detail								[A. thaliana]		Clp C1 TRAP
2300	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19334764(plasma membrane (cell culture))
21173025(root proteome)

Comparative Proteomics Data