PPDB

The Plant Proteome Database

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AT1G67080.1   abscisic acid (aba)-deficient 4

Lab Annot. ABA4 - neoxanthin synthesis - intramolecular oxidoreductase
Mapman: 16.1.4 secondary metabolism.isoprenoids.carotenoids
Curated Location plastid (Pubmed: 23198870 17470058 )

TAIR curated location: chloroplast envelope12775770
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G67080.2 11Arabidopsis thaliana2E-103148991000 (0)C
Os01g03750.1 7Oryza sativa3E-7614868862 (2)M
Zm00001eb335080_P004 agpv5Zea mays2E-6914374880 (0)S
Zm00001eb335080_P001 agpv5Zea mays4E-6914374880 (0)C
Zm00001eb335080_P003 agpv5Zea mays9E-6914374880 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF4281(1)
TargetP: Chloroplast (Class 1 C0.895; M0.035; S0.008; _0.051)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 4 TMs
Aramemnon: 4 TMs
TAT position:
Length 220 aa (-cTP 183) (-lTP 137)
Molecular Weight 24.62 kDA(-cTP 20.56)(-lTP 15.46)
PI 9.45(-cTP 9.12)(-lTP 7.855)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

12766230(Total chloroplast envelope)
19995728(proplastid (Brassica napus))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help