PPDB

 The Plant Proteome Database

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AT1G66260.1   RNA-binding (RRM/RBD/RNP motifs) family protein
Lab Annot. RNA and export factor-binding protein, putative
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G66260.2 11Arabidopsis thaliana029510010014 (13)_
AT5G37720.1 11Arabidopsis thaliana1E-89303606816 (15)C
AT5G37720.2 11Arabidopsis thaliana2E-89299606816 (15)C
Os06g14470.1 7Oryza sativa7E-5430542610 (0)_
Os08g33120.1 7Oryza sativa1E-5325144645 (5)M
Os08g33120.2 7Oryza sativa2E-5022844645 (5)M
Zm00001eb179330_P003 agpv5Zea mays5E-6526150670 (0)M
Zm00001eb179330_P006 agpv5Zea mays1E-6426150660 (0)M
Zm00001eb179330_P001 agpv5Zea mays1E-6426150660 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: FoP_duplication(3) RRM_1(1) RRM_3(1)
TargetP: Cytoplasm (Class 5 C0.619; M0.034; S0.004; _0.683)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 295 aa (-cTP 249)
Molecular Weight 31.32 kDA(-cTP )
PI 10.92(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1113Detail        [A. thaliana] control for RARE-1 co-IP wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1427Detail        [A. thaliana] total leaf tissue 1.11 wild-type
1618Detail        [A. thaliana] m48
2239Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help