PPDB

 The Plant Proteome Database

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AT1G65700.1   Small nuclear ribonucleoprotein family protein
Lab Annot. Small nuclear ribonucleoprotein protein
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G65700.2 11Arabidopsis thaliana2E-669810010033 (14)_
AT1G65700.3 11Arabidopsis thaliana6E-58141696916 (12)_
AT1G19120.1 11Arabidopsis thaliana3E-1483436519 (2)_
Os05g51650.1 7Oryza sativa7E-47139586414 (14)_
Os04g36810.1 7Oryza sativa2E-1277426118 (18)_
GRMZM5G872417_P01 3.21Zea mays8E-5397808828 (28)_
v1_GRMZM2G320379_P01 4a53Zea mays8E-5397808817 (17)_
Zm00001eb294900_P001 agpv5Zea mays8E-539780880 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: LSM(1)
TargetP: Cytoplasm (Class 3 C0.128; M0.105; S0.225; _0.730)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 98 aa (-cTP 96)
Molecular Weight 10.71 kDA(-cTP )
PI 4.83(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1356Detail       leaf [A. thaliana] total tissue - low mass region wild-type
1357Detail       leaf [A. thaliana] total tissue - low mass region clpt1xclpt2
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1496Detail       leaf [A. thaliana] Prep1_Prep2_t1_t2

* For details about the exprimental sources click here.

Published Proteomics Data

 21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data

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