PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G65650.1   Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1
Lab Annot. Ubiquitin C-terminal hydrolase 2 (UCH2) - dually targeted to cytosol & nucleus
Mapman: 29.5.11.5 protein.degradation.ubiquitin.ubiquitin protease
Curated Location cytosol (Pubmed: 17559514 )
nucleus (Pubmed: 17559514 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G16310.1 11Arabidopsis thaliana9E-15933165812 (0)_
AT4G17510.1 11Arabidopsis thaliana8E-14232294716 (7)_
Os02g57630.2 7Oryza sativa033076888 (8)_
Os02g57630.1 7Oryza sativa033076888 (8)_
Os02g08370.1 7Oryza sativa7E-16533068830 (0)_
Zm00001eb259220_P003 agpv5Zea mays2E-16233071840 (0)_
v1_GRMZM2G108739_P02 4a53Zea mays2E-162330718416 (16)_
GRMZM2G108739_P01 3.21Zea mays2E-162330718434 (13)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Peptidase_C12(1) Ribosomal_L12(1) UCH_C(1) ZapD(1)
TargetP: Cytoplasm (Class 2 C0.140; M0.091; S0.071; _0.837)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 330 aa (-cTP 312)
Molecular Weight 37.50 kDA(-cTP )
PI 5.03(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2248Detail       seedlings [A. thaliana] total tissue wild-type
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help