PPDB

 The Plant Proteome Database

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AT1G65540.1   LETM1-like protein
Lab Annot. calcium-binding EF hand protein
Mapman: 30.3 signalling.calcium
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G65540.2 11Arabidopsis thaliana07361001000 (0)M
AT1G65540.3 11Arabidopsis thaliana07361001000 (0)M
AT3G59820.1 11Arabidopsis thaliana0756627711 (5)M
Os04g41950.1 7Oryza sativa075465784 (4)M
Os02g39550.2 7Oryza sativa076265784 (4)M
Os02g39550.1 7Oryza sativa076265784 (4)M
Zm00001eb348080_P001 agpv5Zea mays077564760 (0)M
Zm00001eb246700_P001 agpv5Zea mays076064770 (0)M
GRMZM2G160801_P01 3.21Zea mays077760710 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: EF-hand_1(3) EF-hand_6(3) EF-hand_7(2) LETM1(2) LMBR1(2)
TargetP: Mitochondria (Class 3 C0.030; M0.737; S0.021; _0.258)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 736 aa (-cTP 732)
Molecular Weight 83.56 kDA(-cTP )
PI 5.49(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1581Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1597Detail        [A. thaliana]  
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1613Detail       Natural Senescence leaf [A. thaliana]  
1614Detail       Natural Senescence leaf [A. thaliana]  
1615Detail       Natural Senescence leaf [A. thaliana]  
1618Detail        [A. thaliana] m48
1619Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
2013Detail       leaf [A. thaliana] total leaf tissue wt
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

 16618929(MITO/PLASTID-LOPIT-callus)
17293592(total seedlings û light and dark grown)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
20706207(contaminants cell cycle interactome (cell culture))
21311031(mitochondria)
21173025(root proteome)
21433285(Crude microsomes cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help