PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G65410.1   non-intrinsic ABC protein 11

Lab Annot. TGD3- small ATPase involved inlipid import (ATNAP11)
Mapman: 11.15* lipid metabolism.transport
Curated Location envelope-inner-peripheral-stromal-side (Pubmed: 23198870 17938172 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G67940.1 11Arabidopsis thaliana6E-2824034550 (0)_
AT3G47790.3 11Arabidopsis thaliana2E-1921528550 (0)_
AT3G47790.1 11Arabidopsis thaliana2E-1921528550 (0)_
Os03g46740.2 7Oryza sativa1E-16228379912 (2)C
Os03g46740.1 7Oryza sativa4E-16228379912 (2)C
Os06g48060.1 7Oryza sativa2E-2624133540 (0)C
Zm00001eb306900_P004 agpv5Zea mays3E-16827183940 (0)M
GRMZM5G868168_P01 3.21Zea mays3E-168271839415 (15)M
v1_GRMZM2G055318_P03 4a53Zea mays3E-168271839411 (11)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: AAA_16(1) AAA_21(2) AAA_22(1) AAA_29(1) AAA_30(1) AAA_5(1) ABC_tran(1) Rad17(1)
TargetP: Chloroplast (Class 2 C0.886; M0.106; S0.055; _0.050)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 345 aa (-cTP 299)
Molecular Weight 37.52 kDA(-cTP 32.57)
PI 7.64(-cTP 5.94)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2300Detail        [A. thaliana] Clp C1 TRAP
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19995728(proplastid (Brassica napus))
19525416(leaf (wt and clpr4-1 mutant))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help