PPDB

PPDB	The Plant Proteome Database

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AT1G64860.1 sigma factor A

Lab Annot.

SIG1 sigma factor (SigA)
Mapman: 27.2 RNA.transcription

Curated Location

plastid (Pubmed: 23198870 18431481 )

TAIR curated location: chloroplast10555304

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G64860.2 11 Arabidopsis thaliana 0 468 100 100 0 (0) _
AT1G08540.1 11 Arabidopsis thaliana 3E-43 311 34 56 0 (0) C
AT5G13730.1 11 Arabidopsis thaliana 1E-38 310 35 52 1 (1) C
Os08g06630.1 7 Oryza sativa 1E-157 522 50 67 0 (0) _
Os08g06630.3 7 Oryza sativa 4E-83 387 45 60 0 (0) _
Os11g26160.1 7 Oryza sativa 9E-38 319 32 51 0 (0) C
v1_GRMZM2G543629_P01 4a53 Zea mays 1E-163 503 51 69 0 (0) C
Zm00001eb172090_P001 agpv5 Zea mays 1E-163 503 51 69 0 (0) C
GRMZM2G543629_P01 3.21 Zea mays 1E-163 503 51 69 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	HTH_11(2) HTH_36(3) HTH_9(2) HTH_AsnC-type(2) Sigma70_r2(1) Sigma70_r3(3) Sigma7
TargetP:	Cytoplasm (Class 5 C0.255; M0.223; S0.027; _0.341)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	502 aa (-cTP 422)
Molecular Weight	56.40 kDA(-cTP )
PI	9.51(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19995723(chloroplast reference proteome)

Comparative Proteomics Data