PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G64680.1   beta-carotene isomerase D27

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G64680.2 11Arabidopsis thaliana1E-150203991000 (0)M
AT1G03055.1 11Arabidopsis thaliana2E-4515646620 (0)M
AT4G01995.1 11Arabidopsis thaliana2E-3522836551 (1)C
Os08g02210.1 7Oryza sativa2E-12424373830 (0)C
Os08g02210.2 7Oryza sativa2E-12424373830 (0)C
Os05g04070.1 7Oryza sativa2E-3123134511 (1)C
Zm00001eb260820_P001 agpv5Zea mays1E-11122175860 (0)M
GRMZM2G175989_P01 3.21Zea mays2E-11122175864 (1)M
v1_GRMZM2G175989_P01 4a53Zea mays2E-11122175864 (4)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF4033(1) Prok-E2_E(1)
TargetP: Mitochondria (Class 3 C0.205; M0.673; S0.036; _0.110)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 250 aa (-cTP 230)
Molecular Weight 28.16 kDA(-cTP )
PI 8.52(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1126Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1292Detail       leaf [A. thaliana] co-IP cGEP (rep. 1) stromawild-type
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
2031Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2039Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2041Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2061Detail       Total leaf [A. thaliana] chloroplast stromawt and cgep
2063Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2064Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2071Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2317Detail       leaf [A. thaliana] PG plastoglobule 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

18436743(specific to leaves)
20061580(chloroplast envelope (inner+outer))
21311031(chloroplasts)
21173025(root proteome)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help