PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G64470.1   Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: phosphoinositide 4-kinase gamma 4 (TAIR:AT2G46500.2); Has 8683 Blast hits to 3845 proteins in 607 species: Archae - 0; Bacteria - 8; Metazoa - 3681; Fungi - 1028; Plants - 2383; Viruses - 97; Other Eukaryotes - 1486 (source: NCBI BLink).

Lab Annot. Ubiquitin-like protein
Mapman: 29.5.11 protein.degradation.ubiquitin
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.10)
Links TAIR   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G64460.1 11Arabidopsis thaliana1E-1432041001001 (1)_
AT2G46500.3 11Arabidopsis thaliana2E-5819550700 (0)_
AT2G46500.1 11Arabidopsis thaliana2E-5719251710 (0)_
Os05g51230.1 7Oryza sativa2E-4316149690 (0)_
Os02g18840.1 7Oryza sativa1E-4119144640 (0)_
Os01g13360.2 7Oryza sativa9E-4123337560 (0)_
Zm00001eb382540_P003 agpv5Zea mays4E-4119442610 (0)C
Zm00001eb382540_P001 agpv5Zea mays4E-4119442610 (0)C
Zm00001eb382540_P002 agpv5Zea mays4E-4119442610 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ubiquitin(2)
TargetP: Cytoplasm (Class 5 C0.274; M0.111; S0.039; _0.473)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 213 aa (-cTP 161)
Molecular Weight 23.56 kDA(-cTP )
PI 9.24(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help