PPDB

 The Plant Proteome Database

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AT1G64430.1   Pentatricopeptide repeat (PPR) superfamily protein
Lab Annot. unknown protein (likely plastid)
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G64430.2 11Arabidopsis thaliana055910010015 (15)C
AT1G64430.3 11Arabidopsis thaliana047399990 (0)C
Os08g24390.1 7Oryza sativa050757764 (4)C
Os08g24390.2 7Oryza sativa9E-17644856740 (0)C
Os08g24390.4 7Oryza sativa1E-15741155730 (0)C
Zm00001eb028190_P001 agpv5Zea mays052654730 (0)C
GRMZM2G013650_P01 3.21Zea mays052654739 (8)C
v1_GRMZM2G013650_P01 4a53Zea mays052654731 (1)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DASH_Dad3(4) PPR(2) PPR_3(2)
TargetP: Chloroplast (Class 4 C0.601; M0.235; S0.013; _0.061)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon: 2 TMs
TAT position:
Length 559 aa (-cTP 479) (-lTP 469)
Molecular Weight 61.62 kDA(-cTP 52.90)(-lTP 51.89)
PI 5.73(-cTP 5.40)(-lTP 5.596)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1292Detail       leaf [A. thaliana] co-IP cGEP (rep. 1) stromawild-type
1294Detail       leaf [A. thaliana] co-IP cGEP (rep. 2) stromawild-type
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1675Detail       Rosettes [A. thaliana]  
1676Detail       Rosettes [A. thaliana]  
2122Detail       leaf [A. thaliana] Stroma stromacGep
2125Detail       leaf [A. thaliana] Stroma stromawild type
2128Detail       leaf [A. thaliana] Stroma stromacGep
2321Detail       leaf [A. thaliana]  
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help