PPDB

PPDB	The Plant Proteome Database

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AT1G64350.1 Transducin/WD40 repeat-like superfamily protein

Lab Annot.

Nucleoporin Seh1
Mapman: 29.3.1 protein.targeting.nucleus

Curated Location

nucleus (Pubmed: 21189294 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G30050.1 11 Arabidopsis thaliana 5E-11 311 24 39 17 (11) _
AT3G01340.1 11 Arabidopsis thaliana 1E-10 313 22 40 78 (40) _
AT3G01340.2 11 Arabidopsis thaliana 1E-10 313 22 40 78 (40) _
Os01g43250.1 7 Oryza sativa 1E-135 320 57 75 0 (0) M
Os02g04320.1 7 Oryza sativa 9E-13 315 25 39 8 (8) _
Os02g04320.2 7 Oryza sativa 9E-13 315 25 39 8 (8) _
GRMZM2G057853_P01 3.21 Zea mays 8E-137 320 56 72 0 (0) _
v1_GRMZM2G057853_P01 4a53 Zea mays 8E-137 320 56 72 8 (8) _
Zm00001eb159590_P001 agpv5 Zea mays 8E-137 320 56 72 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ANAPC4_WD40(5) Ge1_WD40(3) PmrD(1) WD40(4)
TargetP:	Chloroplast (Class 2 C0.825; M0.049; S0.006; _0.209)
Predotar:
Subcel. Location:	Lumen
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	326 aa (-cTP 273) (-lTP 252)
Molecular Weight	35.70 kDA(-cTP 30.23)(-lTP 27.99)
PI	4.96(-cTP 4.80)(-lTP 4.909)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data