PPDB

The Plant Proteome Database

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AT1G64230.1   ubiquitin-conjugating enzyme 28

Lab Annot. ubiquitin-conjugating enzyme E2-17 kDa 9 (UBC9)
Mapman: 29.5.11.3 protein.degradation.ubiquitin.E2
Curated Location not plastid (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G64230.2 11Arabidopsis thaliana4E-10914810010020 (20)_
AT5G41700.1 11Arabidopsis thaliana4E-1071489610020 (19)_
AT5G41700.2 11Arabidopsis thaliana4E-1071489610020 (19)_
Os02g16040.1 7Oryza sativa1E-106148969918 (18)_
Os04g57220.2 7Oryza sativa4E-106148959818 (18)_
Os04g57220.1 7Oryza sativa4E-106148959818 (18)_
Zm00001eb066940_P001 agpv5Zea mays4E-10614895980 (0)_
v1_GRMZM2G102471_P01 4a53Zea mays4E-106148959836 (35)_
v1_GRMZM2G102471_P03 4a53Zea mays4E-106148959836 (35)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Prok-E2_B(1) RWD(1) UEV(1) UQ_con(1)
TargetP: Cytoplasm (Class 2 C0.098; M0.135; S0.086; _0.828)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 148 aa (-cTP 63)
Molecular Weight 16.51 kDA(-cTP )
PI 7.72(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
1392Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1393Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

17644812(plasma membrane - suspension cells)

Comparative Proteomics Data


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