PPDB

The Plant Proteome Database

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AT1G64150.1   Uncharacterized protein family (UPF0016)

Lab Annot. manganese transporter (PAM71 - also named CCHA1)
Mapman: 34.12 transport.metal
Curated Location thylakoid-integral (Pubmed: 27020959 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G13590.1 11Arabidopsis thaliana2E-5321849645 (5)C
AT4G13590.2 11Arabidopsis thaliana2E-5321849643 (3)C
AT5G36290.2 11Arabidopsis thaliana6E-2720837560 (0)S
Os01g12220.1 7Oryza sativa2E-5110677880 (0)C
Os11g34180.1 7Oryza sativa3E-5021847610 (0)C
Os11g28300.1 7Oryza sativa2E-2620335540 (0)S
Zm00001eb338890_P001 agpv5Zea mays3E-11925771830 (0)C
Zm00001eb338890_P002 agpv5Zea mays2E-8717078880 (0)_
v1_GRMZM2G464891_P01 4a53Zea mays4E-5815364780 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: UPF0016(2)
TargetP: Chloroplast (Class 1 C0.975; M0.045; S0.008; _0.061)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 7 TMs
Aramemnon: 7 TMs
TAT position:
Length 370 aa (-cTP 297)
Molecular Weight 39.07 kDA(-cTP 30.79)
PI 4.88(-cTP 4.38)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help