PPDB

The Plant Proteome Database

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AT1G64090.2   Reticulan like protein B3

Lab Annot. reticulon protein (RTNLB3)
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links PeptideAtlas   POGS   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G64090.1 11Arabidopsis thaliana0271939320 (12)_
AT5G41600.1 11Arabidopsis thaliana4E-11927568760 (0)_
AT4G11220.1 11Arabidopsis thaliana4E-102292587156 (50)_
Os05g45050.1 7Oryza sativa9E-99265597215 (15)_
Os01g53520.1 7Oryza sativa3E-9826660719 (9)_
Os01g12650.1 7Oryza sativa3E-86294506240 (40)_
GRMZM2G031308_P02 3.21Zea mays1E-100270597114 (14)_
GRMZM2G031308_P01 3.21Zea mays1E-100270597114 (14)_
Zm00001eb153940_P001 agpv5Zea mays1E-10027059710 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Ac76(1) HSP9_HSP12(2) Reticulon(1)
TargetP: Cytoplasm (Class 2 C0.085; M0.077; S0.141; _0.935)
Predotar:
Subcel. Location:
TM-HMM prediction: 3 TMs
Aramemnon: 3 TMs
TAT position:
Length 271 aa (-cTP 233)
Molecular Weight 30.53 kDA(-cTP )
PI 7.17(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

21533090(plasmodesmata-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21988472(vacuole (unfiltered data))
21515685(GreenCut2)

Comparative Proteomics Data


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