PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G62820.1 Calcium-binding EF-hand family protein

Lab Annot.

calmodulin
Mapman: 30.3 signalling.calcium

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G12310.1 11 Arabidopsis thaliana 6E-101 148 94 98 104 (63) _
AT3G56800.1 11 Arabidopsis thaliana 2E-46 147 49 70 221 (140) _
AT2G41110.1 11 Arabidopsis thaliana 2E-46 147 49 70 221 (140) _
Os08g02420.1 7 Oryza sativa 3E-76 143 72 86 27 (27) _
Os07g48780.1 7 Oryza sativa 1E-45 147 48 70 40 (40) _
Os03g20370.1 7 Oryza sativa 1E-45 147 48 70 40 (40) _
GRMZM2G391364_P01 3.21 Zea mays 2E-76 148 71 84 44 (39) _
v1_GRMZM2G391364_P01 4a53 Zea mays 2E-76 148 71 84 40 (39) _
Zm00001eb260970_P001 agpv5 Zea mays 2E-76 148 71 84 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Caleosin(2) DUF4497(2) EF-hand_1(3) EF-hand_11(1) EF-hand_4(2) EF-hand_5(3) EF-h
TargetP:	Cytoplasm (Class 2 C0.103; M0.088; S0.098; _0.850)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	148 aa (-cTP 102)
Molecular Weight	16.58 kDA(-cTP )
PI	4.86(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
26	Detail								leaf [A. thaliana]	plastid thylakoid membrane	wild-type
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
371	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
621	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
1400	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1596	Detail								[A. thaliana]
2005	Detail								leaf [A. thaliana]	RNAi PG plastoglobule	RNAi
2006	Detail								leaf [A. thaliana]	over expressed M48 plastoglobule	M48
2030	Detail								leaf [A. thaliana]	over expressed M48 plastoglobule	M48
2185	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type
2250	Detail								seedlings [A. thaliana]	total tissue	atg5
2317	Detail								leaf [A. thaliana]	PG plastoglobule
2318	Detail								leaf [A. thaliana]	PG plastoglobule
2400	Detail								leaf-soluble [A. thaliana]	GFP-nano-trap	wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

14617066(Nuclear proteome)
16358359(cell suspension (Gamborg))
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data