PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G62370.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G03965.1 11 Arabidopsis thaliana 9E-47 223 43 57 0 (0) _
AT4G22250.1 11 Arabidopsis thaliana 2E-45 195 47 60 0 (0) _
AT3G25030.1 11 Arabidopsis thaliana 3E-29 205 35 49 0 (0) _
Os01g68900.1 7 Oryza sativa 1E-20 50 68 88 0 (0) _
Os09g32730.1 7 Oryza sativa 3E-19 49 67 81 0 (0) M
Os08g41520.1 7 Oryza sativa 2E-18 47 68 80 0 (0) M
v1_GRMZM2G145374_P01 4a53 Zea mays 2E-20 50 68 88 0 (0) _
Zm00001eb143400_P001 agpv5 Zea mays 2E-20 50 68 88 0 (0) _
GRMZM2G145374_P01 3.21 Zea mays 2E-20 50 68 88 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Prok-RING_4(1) zf-C3HC4(1) zf-C3HC4_2(1) zf-C3HC4_3(1) zf-C3HC4_4(1) zf-rbx1(1)
TargetP:	Cytoplasm (Class 2 C0.216; M0.082; S0.054; _0.873)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	204 aa (-cTP 195)
Molecular Weight	22.91 kDA(-cTP )
PI	4.54(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1458	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data