PPDB

The Plant Proteome Database

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AT1G61870.1   pentatricopeptide repeat 336

Lab Annot. PPR336 (PENTATRICOPEPTIDE REPEAT 336)
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location
TAIR curated location: mitochondrion14671022
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G11630.1 11Arabidopsis thaliana040870820 (0)M
AT1G55890.1 11Arabidopsis thaliana3E-60385315418 (13)M
AT4G36680.1 11Arabidopsis thaliana5E-5839030551 (0)M
Os01g58080.3 7Oryza sativa2E-12239547650 (0)M
Os01g58080.1 7Oryza sativa2E-12239547650 (0)M
Os01g58080.2 7Oryza sativa2E-12239547650 (0)M
AC233851.1_FGP014 3.21Zea mays6E-11939847643 (3)C
Zm00001eb151070_P002 agpv5Zea mays6E-11939847640 (0)C
Zm00001eb151070_P001 agpv5Zea mays6E-11939847640 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ECSIT(3) GGA_N-GAT(3) PPR(8) PPR_1(7) PPR_2(8) PPR_3(3) PPR_long(2)
TargetP: Mitochondria (Class 5 C0.607; M0.621; S0.012; _0.003)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 408 aa (-cTP 367)
Molecular Weight 45.76 kDA(-cTP )
PI 8.81(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

MitoDB(Mitochondrial proteome)
17432890(leaf total membranes)
19525416(leaf (wt and clpr4-1 mutant))
20706207(cell cycle interactome (cell culture))
21311031(mitochondria)
21841088(mitochondria (2DE native gel))
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data


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