PPDB

 The Plant Proteome Database

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AT1G60950.1   2Fe-2S ferredoxin-like superfamily protein
Lab Annot. Fd2-leaf
Mapman: 1.1.5.2 PS.lightreaction.other electron carrier (ox/red).ferredoxin
Curated Location thylakoid-peripheral-stromal-side (Pubmed: 23198870 18431481 )

TAIR curated location: chloroplast stroma2102830
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G10960.1 11Arabidopsis thaliana7E-85148879289 (87)C
AT2G27510.1 11Arabidopsis thaliana1E-4311261750 (0)C
AT5G10000.1 11Arabidopsis thaliana8E-3915045640 (0)C
Os08g01380.1 7Oryza sativa6E-57150587282 (82)M
Os03g61960.1 7Oryza sativa1E-4515251689 (9)C
Os03g61960.2 7Oryza sativa1E-4515251685 (5)C
GRMZM2G122337_P01 3.21Zea mays7E-57134678148 (48)C
v1_GRMZM2G122337_P01 4a53Zea mays7E-57134678157 (57)C
Zm00001eb260140_P002 agpv5Zea mays7E-5713467810 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Fer2(1)
TargetP: Chloroplast (Class 1 C0.962; M0.134; S0.032; _0.009)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 148 aa (-cTP 96)
Molecular Weight 15.54 kDA(-cTP 10.28)
PI 4.34(-cTP 3.84)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
187_188Detail       leaf [A. thaliana] chloroplast stromaclpr2-1
303Detail       leaf [A. thaliana] chloroplast stromawild-type
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
355Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
655Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
870Detail       leaf [A. thaliana] chloroplast stromawild-type
1356Detail       leaf [A. thaliana] total tissue - low mass region wild-type
1398Detail       leaf [A. thaliana] total leaf tissue 1.14 Prep1_Prep2
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1413Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR1 wild-type
1414Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR2 wild-type
1415Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.1 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1428Detail        [A. thaliana] total leaf tissue 1.11 Prep1_Prep2_t1_t2
1455Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1456Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1457Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1458Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 1)
1459Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 2)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1596Detail        [A. thaliana]  
1745Detail        [A. thaliana] Col-0
1870Detail       Total leaf [A. thaliana] Stroma wild-type
2088Detail       Total leaf [A. thaliana] total soluble wild-type
2112Detail       leaf [A. thaliana] Stroma stromawt
2113Detail       leaf [A. thaliana] Stroma stromawt
2114Detail       leaf [A. thaliana] Stroma stromawt
2115Detail       leaf [A. thaliana] Stroma stromacGep
2116Detail       leaf [A. thaliana] Stroma stromacGep
2117Detail       leaf [A. thaliana] Stroma stromacGep
2142Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2144Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2147Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2148Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2150Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2152Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
18814325(cotyledons)
19816138(rosette leaves)
19995723(chloroplast reference proteome)

Comparative Proteomics Data
Expr*SourceTech.SpotPepSeqChargeState(z)AreaRatioAmbiguityTissueSample from
180_181clpr2-1 cICAT - exp1 / wt cICAT - exp1cICAT12K.FITPEGELEVECDDDVYVLDAAEEAGIDLPYSCR.A + 2 ICAT_l / K.FITPEGELEVECDDDVYVLDAAEEAGIDLPYSCR.A + 2 ICAT_h30.90 leaf [A. thaliana] chloroplast stroma
195_194ffc1-2 cICAT- exp1 / wt cICAT- exp1cICAT3FITPEGELEVECDDDVYVLDAAEEAGIDLPYSCR + 2 ICAT_l / FITPEGELEVECDDDVYVLDAAEEAGIDLPYSCR + 2 ICAT_h31.00 leaf [A. thaliana] chloroplast stroma
195_194ffc1-2 cICAT- exp1 / wt cICAT- exp1cICAT4K.FITPEGELEVECDDDVYVLDAAEEAGIDLPYSCR.A + 2 ICAT_l / K.FITPEGELEVECDDDVYVLDAAEEAGIDLPYSCR.A + 2 ICAT_h31.20 leaf [A. thaliana] chloroplast stroma

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