PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G60590.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G10640.1 11 Arabidopsis thaliana 0 547 73 83 0 (0) M
AT5G14650.1 11 Arabidopsis thaliana 4E-179 420 58 69 0 (0) S
AT3G26610.1 11 Arabidopsis thaliana 2E-133 465 46 60 0 (0) S
Os01g44970.1 7 Oryza sativa 0 418 64 77 0 (0) S
Os01g45060.1 7 Oryza sativa 3E-157 361 60 73 0 (0) M
Os05g50260.1 7 Oryza sativa 3E-141 271 70 84 0 (0) _
GRMZM2G002034_P01 3.21 Zea mays 0 515 55 66 0 (0) M
v1_GRMZM2G002034_P02 4a53 Zea mays 0 515 55 66 0 (0) M
GRMZM2G037431_P01 3.21 Zea mays 0 546 56 67 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) End_N_terminal(1) Glyco_hydro_28(2) NosD(1) Pectate_lyase_3(2)
TargetP:	Mitochondria (Class 5 C0.016; M0.224; S0.056; _0.134)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	540 aa (-cTP 487)
Molecular Weight	59.63 kDA(-cTP )
PI	6.44(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data