PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G60200.1   splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein

Lab Annot. splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein
Mapman: 27.1.1 RNA.processing.splicing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G60200.4 11Arabidopsis thaliana07501001000 (0)M
AT1G60200.3 11Arabidopsis thaliana07501001000 (0)M
AT1G60200.2 11Arabidopsis thaliana07501001000 (0)M
Os08g32100.1 7Oryza sativa3E-161844476425 (25)C
Zm00001eb179020_P002 agpv5Zea mays4E-16378346640 (0)C
v1_GRMZM2G132857_P01 4a53Zea mays4E-163783466411 (11)C
GRMZM2G132857_P01 3.21Zea mays4E-16378346644 (4)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PWI(1) RRM_1(1)
TargetP: Chloroplast (Class 3 C0.928; M0.013; S0.011; _0.496)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 899 aa (-cTP 885)
Molecular Weight 101.50 kDA(-cTP 100.14)
PI 5.54(-cTP 5.64)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1544Detail       leaf [A. thaliana] TiO2 thylakoid membranek1xk3
1662Detail        [A. thaliana]  
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help