PPDB

The Plant Proteome Database

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AT1G60080.1   3'-5'-exoribonuclease family protein

Lab Annot.
Mapman: 27.1.19 RNA.processing.ribonucleases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G12990.4 11Arabidopsis thaliana6E-2527328470 (0)_
AT3G12990.1 11Arabidopsis thaliana1E-2427328470 (0)_
AT3G12990.3 11Arabidopsis thaliana1E-2427328470 (0)_
Os11g20689.1 7Oryza sativa6E-13128760810 (0)_
Os02g34570.1 7Oryza sativa9E-2928330490 (0)_
Os02g34570.2 7Oryza sativa9E-2928330490 (0)_
GRMZM5G886044_P01 3.21Zea mays3E-12629359780 (0)_
Zm00001eb036840_P003 agpv5Zea mays3E-12629359780 (0)_
Zm00001eb175450_P001 agpv5Zea mays2E-12329358780 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RNase_PH(2) RNase_PH_C(3)
TargetP: Cytoplasm (Class 3 C0.226; M0.196; S0.025; _0.651)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position:
Length 302 aa (-cTP 229)
Molecular Weight 32.70 kDA(-cTP )
PI 4.96(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help