PPDB

 The Plant Proteome Database

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AT1G59840.1   cofactor assembly of complex C
Lab Annot. CCB4 Protein ; cytochrome b6 heme biogenesis
Mapman: 29.8 protein.protein assembly and cofactor ligation; 1.1.9* PS.lightreaction.biogenesis
Curated Location thylakoid-integral (Pubmed: 23198870 18593701 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G59840.2 11Arabidopsis thaliana029710010018 (18)M
AT1G59840.3 11Arabidopsis thaliana029795950 (0)M
Os04g55690.1 7Oryza sativa3E-11424965796 (6)C
Zm00001eb068300_P001 agpv5Zea mays7E-11023767800 (0)M
v1_GRMZM2G177145_P01 4a53Zea mays6E-298268802 (2)_
GRMZM2G177145_P01 3.21Zea mays6E-298268802 (2)_

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CCB2_CCB4(1) DUF5074(1) GAF_2(1) WBS28(1)
TargetP: Mitochondria (Class 4 C0.152; M0.447; S0.011; _0.191)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 3 TMs
TAT position:
Length 297 aa (-cTP 265)
Molecular Weight 32.22 kDA(-cTP )
PI 9.31(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1676Detail       Rosettes [A. thaliana]  
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2132Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
18431481(chloroplast)
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help