PPDB

 The Plant Proteome Database

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AT1G59760.1   RNA helicase%2C ATP-dependent%2C SK12/DOB1 protein
Lab Annot. ATP-dependent RNA helicase
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G06990.1 11Arabidopsis thaliana0968476613 (5)_
AT3G46960.3 11Arabidopsis thaliana7E-14258342590 (0)_
AT3G46960.2 11Arabidopsis thaliana7E-14258342590 (0)_
Os12g18140.1 7Oryza sativa076877890 (0)M
Os11g07500.1 7Oryza sativa0975496610 (10)_
Os11g07500.2 7Oryza sativa092148666 (6)_
Zm00001eb379350_P005 agpv5Zea mays0100571810 (0)_
Zm00001eb379350_P002 agpv5Zea mays064576850 (0)_
Zm00001eb337140_P001 agpv5Zea mays0100847650 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: APG6_N(2) ATPase_2(1) DEAD(2) DSHCT(1) DUF349(1) Helicase_C(1) ResIII(1) rRNA_pr
TargetP: Cytoplasm (Class 2 C0.108; M0.077; S0.077; _0.872)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 988 aa (-cTP 978)
Molecular Weight 111.89 kDA(-cTP )
PI 5.84(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help