PPDB

PPDB	The Plant Proteome Database

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AT1G59660.1 Nucleoporin autopeptidase

Lab Annot.

Nucleoporin Nup98b
Mapman: 29.5.5.9* protein.degradation.serine protease SP.S59

Curated Location

nucleus (Pubmed: 21189294 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G59660.2 11 Arabidopsis thaliana 0 997 99 99 0 (0) C
AT1G59660.3 11 Arabidopsis thaliana 0 997 99 99 0 (0) C
AT1G10390.3 11 Arabidopsis thaliana 0 1085 61 70 0 (0) C
Os12g06890.1 7 Oryza sativa 0 1019 44 56 17 (17) C
Os12g06870.1 7 Oryza sativa 0 1061 44 56 0 (0) C
Os01g28690.1 7 Oryza sativa 3E-52 178 50 66 0 (0) C
GRMZM2G059015_P01 3.21 Zea mays 0 1059 44 55 6 (6) C
v1_GRMZM2G059015_P01 4a53 Zea mays 0 1059 44 55 35 (35) C
Zm00001eb110560_P003 agpv5 Zea mays 0 1039 44 56 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Nucleoporin2(1)
TargetP:	Chloroplast (Class 2 C0.846; M0.059; S0.003; _0.177)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	997 aa (-cTP 958)
Molecular Weight	103.37 kDA(-cTP 99.25)
PI	9.10(-cTP 9.10)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data