PPDB

 The Plant Proteome Database

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AT1G56710.1   Pectin lyase-like superfamily protein
Lab Annot.
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G02460.1 11Arabidopsis thaliana039061800 (0)M
AT1G48100.1 11Arabidopsis thaliana7E-17239457750 (0)M
AT4G01890.1 11Arabidopsis thaliana1E-16438957760 (0)S
Os05g20020.1 7Oryza sativa3E-16738958760 (0)S
Os01g19170.1 7Oryza sativa1E-16339156740 (0)S
Os01g22590.1 7Oryza sativa6E-14440952680 (0)C
v1_GRMZM2G170388_P01 4a53Zea mays7E-16439156741 (1)S
Zm00001eb129970_P001 agpv5Zea mays7E-16439156740 (0)S
GRMZM2G170388_P01 3.21Zea mays7E-16439156740 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Beta_helix(2) DUF4957(2) Glyco_hydro_28(1) NosD(1) Pectate_lyase_3(3)
TargetP: Secreted (Class 1 C0.014; M0.049; S0.971; _0.024)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 434 aa (-cTP 382)
Molecular Weight 47.44 kDA(-cTP )
PI 6.68(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help