PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G56700.1   Peptidase C15%2C pyroglutamyl peptidase I-like protein
Lab Annot. pyroglutamyl peptidase (PGP2)
Mapman: 29.5.3.4.1* protein.degradation.cysteine protease.CF.C15
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G56700.4 11Arabidopsis thaliana7E-1652191001000 (0)_
AT1G56700.2 11Arabidopsis thaliana7E-16521910010023 (13)_
AT1G56700.3 11Arabidopsis thaliana2E-14119010010017 (10)_
Os07g44610.1 7Oryza sativa2E-11421868835 (5)_
Os07g44610.2 7Oryza sativa2E-11421868835 (5)_
Os09g23280.1 7Oryza sativa6E-11321668830 (0)_
Zm00001eb328970_P003 agpv5Zea mays2E-11221668830 (0)_
GRMZM2G104443_P01 3.21Zea mays2E-112216688327 (24)_
GRMZM2G104443_P02 3.21Zea mays2E-112216688327 (24)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: OKR_DC_1_N(1) Peptidase_C15(1)
TargetP: Cytoplasm (Class 2 C0.233; M0.082; S0.059; _0.863)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 219 aa (-cTP 189)
Molecular Weight 24.05 kDA(-cTP )
PI 5.98(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 16358359(cell suspension (M&Skoog))
17828791(total leaf)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help