PPDB

PPDB	The Plant Proteome Database

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AT1G56040.1 HEAT/U-box protein

Lab Annot.

HEAT/U-box domain-containing protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G56030.1 11 Arabidopsis thaliana 1E-170 423 62 74 0 (0) _
AT1G01660.1 11 Arabidopsis thaliana 1E-34 322 34 51 0 (0) _
AT1G01660.2 11 Arabidopsis thaliana 5E-34 323 34 51 0 (0) _
Os06g06760.3 7 Oryza sativa 1E-27 98 57 69 0 (0) _
Os06g06760.1 7 Oryza sativa 1E-27 98 57 69 0 (0) _
Os06g06760.2 7 Oryza sativa 1E-27 98 57 69 0 (0) _
Zm00001eb375820_P003 agpv5 Zea mays 8E-26 147 42 61 0 (0) _
Zm00001eb375820_P001 agpv5 Zea mays 3E-25 147 42 61 0 (0) _
Zm00001eb375820_P002 agpv5 Zea mays 4E-25 147 42 61 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF1664(2) DUF3175(1) Filament(2) HetR_C(2) TPR_MLP1_2(3) U-box(1)
TargetP:	Secreted (Class 4 C0.045; M0.081; S0.566; _0.333)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	420 aa (-cTP 343)
Molecular Weight	49.53 kDA(-cTP )
PI	5.25(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data