PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G55930.1   CBS domain-containing protein / transporter associated domain-containing protein

Lab Annot. CBS domain-containing protein / transporter associated domain-containing protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G55930.2 11Arabidopsis thaliana0583991000 (0)C
AT3G13070.1 11Arabidopsis thaliana065780881 (1)C
AT2G14520.4 11Arabidopsis thaliana5E-1427128470 (0)S
Os03g39640.1 6Oryza sativa046480890 (0)C
Os03g39640.2 7Oryza sativa046480890 (0)C
Os03g47120.1 7Oryza sativa9E-1225127470 (0)S
Zm00001eb049810_P002 agpv5Zea mays048677850 (0)C
Zm00001eb049810_P001 agpv5Zea mays048677850 (0)C
Zm00001eb049810_P003 agpv5Zea mays048677850 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: APC_r(1) CBS(2) CorC_HlyC(1) DUF21(1)
TargetP: Chloroplast (Class 1 C0.926; M0.096; S0.002; _0.061)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 5 TMs
Aramemnon: 5 TMs
TAT position:
Length 653 aa (-cTP 581)
Molecular Weight 72.93 kDA(-cTP 64.61)
PI 5.47(-cTP 5.05)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
877Detail       leaf [A. thaliana] chloroplast stromawild-type

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
18436743(specific to flower)
20061580(chloroplast envelope (inner+outer))
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help