PPDB

PPDB	The Plant Proteome Database

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AT1G55890.1 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

pentatricopeptide repeat (PPR) protein (mS78 (rPPR3a))
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

mitochondria

TAIR curated location: mitochondrion14671022

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G13160.1 11 Arabidopsis thaliana 0 400 66 79 49 (36) M
AT3G13150.1 11 Arabidopsis thaliana 3E-88 401 38 58 0 (0) C
AT1G61870.1 11 Arabidopsis thaliana 6E-59 385 31 54 4 (3) M
Os01g57630.2 7 Oryza sativa 1E-71 350 35 59 0 (0) C
Os01g57630.1 7 Oryza sativa 1E-71 350 35 59 0 (0) C
Os01g57630.3 7 Oryza sativa 1E-71 350 35 59 0 (0) C
GRMZM2G139141_P01 3.21 Zea mays 9E-76 346 36 59 2 (2) C
v1_GRMZM2G139141_P01 4a53 Zea mays 9E-76 346 36 59 1 (1) C
Zm00001eb369740_P001 agpv5 Zea mays 9E-76 346 36 59 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	4HB_MCP_1(2) ANAPC3(2) ATP13(2) B12-binding_2(1) Cas9-BH(2) Clathrin(4) MRP-S27(
TargetP:	Mitochondria (Class 4 C0.369; M0.642; S0.008; _0.038)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	398 aa (-cTP 376)
Molecular Weight	44.99 kDA(-cTP )
PI	8.90(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
1406	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1931	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2017	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2250	Detail								seedlings [A. thaliana]	total tissue	atg5
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type
2273	Detail								seedlings [A. thaliana]	total tissue	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

MitoDB(Mitochondrial proteome)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
20706207(cell cycle interactome (cell culture))
22060019(phosphoproteome - N-starved seedlings)
21311031(mitochondria)
21841088(mitochondria (2DE native gel))
21173025(root proteome)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data