PPDB

The Plant Proteome Database

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AT1G55890.1   Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot. pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location mitochondria

TAIR curated location: mitochondrion14671022
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G13160.1 11Arabidopsis thaliana0400667939 (36)M
AT3G13150.1 11Arabidopsis thaliana3E-8840138580 (0)C
AT1G61870.1 11Arabidopsis thaliana6E-5938531544 (3)M
Os01g57630.2 7Oryza sativa1E-7135035590 (0)C
Os01g57630.1 7Oryza sativa1E-7135035590 (0)C
Os01g57630.3 7Oryza sativa1E-7135035590 (0)C
GRMZM2G139141_P01 3.21Zea mays9E-7634636592 (2)C
v1_GRMZM2G139141_P01 4a53Zea mays9E-7634636591 (1)C
Zm00001eb369740_P001 agpv5Zea mays9E-7634636590 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: 4HB_MCP_1(2) ANAPC3(2) ATP13(2) B12-binding_2(1) Cas9-BH(2) Clathrin(4) MRP-S27(
TargetP: Mitochondria (Class 4 C0.369; M0.642; S0.008; _0.038)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 398 aa (-cTP 376)
Molecular Weight 44.99 kDA(-cTP )
PI 8.90(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1931Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

MitoDB(Mitochondrial proteome)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
20706207(cell cycle interactome (cell culture))
22060019(phosphoproteome - N-starved seedlings)
21311031(mitochondria)
21841088(mitochondria (2DE native gel))
21173025(root proteome)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data


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