PPDB

PPDB	The Plant Proteome Database

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AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein

Lab Annot.

UPL1 (UBIQUITIN-PROTEIN LIGASE 1); ubiquitin-protein ligase
Mapman: 29.5.11.4.1 protein.degradation.ubiquitin.E3.HECT

Curated Location

TAIR curated location: mitochondrion & ubiquitin ligase complex14671022,11019805

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G55860.2 10 Arabidopsis thaliana 0 3681 100 100 49 (24) M
AT1G70320.1 11 Arabidopsis thaliana 0 3713 91 94 84 (51) M
AT3G17205.1 11 Arabidopsis thaliana 2E-69 408 39 59 2 (0) _
Os09g07900.1 7 Oryza sativa 0 3676 54 69 10 (10) _
Os12g24080.1 7 Oryza sativa 0 1023 56 69 24 (24) C
Os05g06690.1 7 Oryza sativa 1E-61 410 37 55 0 (0) _
GRMZM2G021299_P01 3.21 Zea mays 0 3802 53 68 0 (0) _
Zm00001eb094520_P002 agpv5 Zea mays 0 3802 53 68 0 (0) _
v1_GRMZM2G021299_P01 4a53 Zea mays 0 3802 53 68 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Arm(3) DUF4636(2) DUF908(2) DUF913(2) HECT(1) UBA(1) UBM(3) UIM(1)
TargetP:	Mitochondria (Class 4 C0.045; M0.575; S0.229; _0.175)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:	3 TMs
TAT position:
Length	3681 aa (-cTP 3674)
Molecular Weight	405.00 kDA(-cTP )
PI	4.96(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
622	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
1345	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 1)
1346	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 2)
1347	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 3)
1349	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 2)
1393	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1394	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1397	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1425	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 2)
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)
1440	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 2)
1441	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 3)
1442	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 1)
1443	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 2)
1444	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1529	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	wild-type (rep. 1)
1532	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	clps (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1934	Detail								leaf [A. thaliana]	chloroplast	wild-type
1942	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1948	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2303	Detail								[A. thaliana]		Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

MitoDB(Mitochondrial proteome)
15276459(trichomes)
17432890(leaf total membranes)
18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data