PPDB

The Plant Proteome Database

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AT1G55265.1   DUF538 family protein%2C putative (Protein of unknown function%2C DUF538)

Lab Annot. unknown protein DUF538 domain
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G19860.1 11Arabidopsis thaliana2E-31117446891 (91)S
AT5G54530.1 11Arabidopsis thaliana4E-2311540550 (0)S
AT1G61667.1 11Arabidopsis thaliana1E-2211538600 (0)S
Os03g48626.1 7Oryza sativa3E-33122406246 (46)S
Os03g48626.2 7Oryza sativa4E-33122406246 (46)S
Os07g36410.1 7Oryza sativa3E-24118386016 (16)S
Zm00001eb217080_P001 agpv5Zea mays1E-3711946680 (0)S
AC213463.3_FGP007 3.21Zea mays1E-3711946680 (0)S
GRMZM2G389510_P01 3.21Zea mays2E-3711946680 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF538(1) TrkA_TMD(1)
TargetP: Secreted (Class 2 C0.283; M0.022; S0.975; _0.001)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 175 aa (-cTP 144)
Molecular Weight 19.14 kDA(-cTP )
PI 5.00(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help