PPDB

 The Plant Proteome Database

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AT1G54870.1   NAD(P)-binding Rossmann-fold superfamily protein
Lab Annot. NADPH-dependent aldehyde reductase (AKR)
Mapman: *20.3 stress.carbonyls
Curated Location plastid (Pubmed: 23198870 21169367 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G54870.2 11Arabidopsis thaliana03351001000 (0)C
AT3G05260.1 11Arabidopsis thaliana6E-17028379916 (5)_
AT5G06060.1 11Arabidopsis thaliana4E-262583549193 (133)_
Os05g04870.1 7Oryza sativa3E-14129266810 (0)C
Os02g30060.1 7Oryza sativa3E-2825031500 (0)C
Os12g13930.1 7Oryza sativa4E-2725228480 (0)C
Zm00001eb108670_P001 agpv5Zea mays8E-13928264830 (0)M
v1_GRMZM2G339994_P01 4a53Zea mays8E-13928264830 (0)M
GRMZM2G339994_P01 3.21Zea mays8E-13928264831 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: 2-Hacid_dh_C(2) adh_short(1) adh_short_C2(1) C_GCAxxG_C_C(1) KR(1)
TargetP: Chloroplast (Class 3 C0.742; M0.158; S0.021; _0.036)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 335 aa (-cTP 289)
Molecular Weight 36.76 kDA(-cTP 31.46)
PI 8.78(-cTP 6.13)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
2225Detail       leaf [A. thaliana] total leaf tissue Clp P3 trap
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2268Detail       seedlings [A. thaliana] total tissue wild-type
2269Detail       seedlings [A. thaliana] total tissue wild-type
2270Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type
2272Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2274Detail       seedlings [A. thaliana] total tissue wild-type
2275Detail       seedlings [A. thaliana] total tissue wild-type
2291Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 11402211,12068122,15047896,16679420,17028149(seed-all-Jobpapers)
18599647(seed proteome)
19546170(mature pollen grains)
19508356(mature pollen grains and pollen tubes)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help