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PPDB	The Plant Proteome Database

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AT1G54490.1 exoribonuclease 4

Lab Annot.

exoribonuclease 4
Mapman: 28.99 DNA.unspecified

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G54490.2 11 Arabidopsis thaliana 0 878 100 100 0 (0) _
AT1G75660.1 11 Arabidopsis thaliana 0 447 65 79 7 (6) S
AT5G42540.1 11 Arabidopsis thaliana 9E-177 433 63 79 0 (0) _
Os03g58060.1 7 Oryza sativa 0 910 65 75 0 (0) _
Os03g58060.2 7 Oryza sativa 0 730 71 80 0 (0) _
Os03g58060.3 7 Oryza sativa 0 687 72 82 0 (0) _
Zm00001eb213060_P001 agpv5 Zea mays 0 958 61 71 0 (0) _
v1_GRMZM2G099630_P01 4a53 Zea mays 0 958 61 71 0 (0) _
GRMZM2G099630_P01 3.21 Zea mays 0 958 61 71 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	V-ATPase_G(1) XRN_M(2) XRN_N(1) zf-ANAPC11(2) zf-CCHC(1) zf-CCHC_2(1)
TargetP:	Cytoplasm (Class 4 C0.029; M0.491; S0.132; _0.728)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	947 aa (-cTP 943)
Molecular Weight	107.78 kDA(-cTP )
PI	6.37(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2299	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data