PPDB

The Plant Proteome Database

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AT1G54490.1   exoribonuclease 4

Lab Annot. exoribonuclease 4
Mapman: 28.99 DNA.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G54490.2 11Arabidopsis thaliana08781001000 (0)_
AT1G75660.1 11Arabidopsis thaliana044765797 (6)S
AT5G42540.1 11Arabidopsis thaliana9E-17743363790 (0)_
Os03g58060.1 7Oryza sativa091065750 (0)_
Os03g58060.2 7Oryza sativa073071800 (0)_
Os03g58060.3 7Oryza sativa068772820 (0)_
Zm00001eb213060_P001 agpv5Zea mays095861710 (0)_
v1_GRMZM2G099630_P01 4a53Zea mays095861710 (0)_
GRMZM2G099630_P01 3.21Zea mays095861710 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: V-ATPase_G(1) XRN_M(2) XRN_N(1) zf-ANAPC11(2) zf-CCHC(1) zf-CCHC_2(1)
TargetP: Cytoplasm (Class 4 C0.029; M0.491; S0.132; _0.728)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 947 aa (-cTP 943)
Molecular Weight 107.78 kDA(-cTP )
PI 6.37(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2299Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help