PPDB

 The Plant Proteome Database

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AT1G54350.1   ABC transporter family protein
Lab Annot. ABC transporter protein
Mapman: 34.8 transport.metabolite transporters at the envelope membrane
Curated Location plastid (Pubmed: 23198870 18431481 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G39850.3 11Arabidopsis thaliana1E-4753329479 (9)M
AT4G39850.2 11Arabidopsis thaliana1E-4753329479 (9)M
AT4G39850.1 11Arabidopsis thaliana1E-4753329479 (9)M
Os01g11946.1 7Oryza sativa0655667922 (22)C
Os01g11946.2 7Oryza sativa0551647715 (15)M
Os01g73530.1 7Oryza sativa6E-4654628450 (0)M
GRMZM2G074103_P03 3.21Zea mays0557637624 (24)_
v1_GRMZM2G074103_P04 4a53Zea mays0557637614 (14)_
v1_GRMZM2G074103_P03 4a53Zea mays0557637614 (14)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA_16(1) AAA_21(1) AAA_22(1) AAA_23(1) AAA_24(1) AAA_29(1) AAA_30(2) AAA_5(1) A
TargetP: Chloroplast (Class 2 C0.845; M0.126; S0.029; _0.048)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 4 TMs
Aramemnon: 4 TMs
TAT position:
Length 706 aa (-cTP 652) (-lTP 570)
Molecular Weight 80.05 kDA(-cTP 73.91)(-lTP 64.42)
PI 5.79(-cTP 5.12)(-lTP 4.953)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
875Detail       leaf [A. thaliana] chloroplast stromawild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1043Detail       leaf [A. thaliana] plastid - coIP thylakoid membrane 
1260Detail       leaf [A. thaliana] co-IP SHOOT1 (rep. 1) thylakoid membranewild-type
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1675Detail       Rosettes [A. thaliana]  
1676Detail       Rosettes [A. thaliana]  
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1830Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1832Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2311Detail       leaf [A. thaliana] PG plastoglobule 
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2313Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2315Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

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