PPDB

PPDB	The Plant Proteome Database

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AT1G54350.1 ABC transporter family protein

Lab Annot.

ABC transporter protein
Mapman: 34.8 transport.metabolite transporters at the envelope membrane

Curated Location

plastid (Pubmed: 23198870 18431481 ) (supported by in-house exprements)

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G39850.3 11 Arabidopsis thaliana 1E-47 533 29 47 9 (9) M
AT4G39850.2 11 Arabidopsis thaliana 1E-47 533 29 47 9 (9) M
AT4G39850.1 11 Arabidopsis thaliana 1E-47 533 29 47 9 (9) M
Os01g11946.1 7 Oryza sativa 0 655 66 79 22 (22) C
Os01g11946.2 7 Oryza sativa 0 551 64 77 15 (15) M
Os01g73530.1 7 Oryza sativa 6E-46 546 28 45 0 (0) M
GRMZM2G074103_P03 3.21 Zea mays 0 557 63 76 24 (24) _
v1_GRMZM2G074103_P04 4a53 Zea mays 0 557 63 76 14 (14) _
v1_GRMZM2G074103_P03 4a53 Zea mays 0 557 63 76 14 (14) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_16(1) AAA_21(1) AAA_22(1) AAA_23(1) AAA_24(1) AAA_29(1) AAA_30(2) AAA_5(1) A
TargetP:	Chloroplast (Class 2 C0.845; M0.126; S0.029; _0.048)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	4 TMs
Aramemnon:	4 TMs
TAT position:
Length	706 aa (-cTP 652) (-lTP 570)
Molecular Weight	80.05 kDA(-cTP 73.91)(-lTP 64.42)
PI	5.79(-cTP 5.12)(-lTP 4.953)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
327	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
343	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
875	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
876	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
1043	Detail								leaf [A. thaliana]	plastid - coIP thylakoid membrane
1260	Detail								leaf [A. thaliana]	co-IP SHOOT1 (rep. 1) thylakoid membrane	wild-type
1347	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 3)
1350	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 3)
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)
1440	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 2)
1442	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 1)
1444	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1675	Detail								Rosettes [A. thaliana]
1676	Detail								Rosettes [A. thaliana]
1828	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Fluctuating light
1830	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Normal light
1832	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Normal light
1988	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data