PPDB

The Plant Proteome Database

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AT1G54340.1   isocitrate dehydrogenase

Lab Annot. ICDH; isocitrate dehydrogenase (NADP+)
Mapman: 8.1.4 TCA / org.transformation.TCA.IDH
Curated Location peroxisome (Pubmed: 17951448 21472859 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G65930.1 11Arabidopsis thaliana04108592998 (709)_
AT5G14590.1 11Arabidopsis thaliana04067787216 (185)C
AT1G54340.2 11Arabidopsis thaliana02971001000 (0)_
Os05g49760.1 7Oryza sativa041484905 (5)_
Os01g46610.1 7Oryza sativa0414839135 (35)_
Os01g14580.1 7Oryza sativa041081890 (0)_
GRMZM2G432128_P01 3.21Zea mays0414829051 (30)_
Zm00001eb359420_P002 agpv5Zea mays041482900 (0)_
Zm00001eb158070_P002 agpv5Zea mays042381890 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Iso_dh(1)
TargetP: Cytoplasm (Class 1 C0.067; M0.095; S0.121; _0.965)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 416 aa (-cTP 404)
Molecular Weight 47.23 kDA(-cTP )
PI 7.58(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1018Detail        [aphid]  
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2271Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
17828791(total leaf)
17951448(peroxisome (leaves))
18814325(cotyledons)
18931141(peroxisomes- high&low purity (cell culture))
18931141(peroxisomes-high purity (cell culture))
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19329564(peroxisomes (leaf))
21311031(mitochondria)
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help