PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G54240.1   winged-helix DNA-binding transcription factor family protein

Lab Annot.
Mapman: 27.3.25 RNA.regulation of transcription.MYB domain transcription factor family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G54230.1 11Arabidopsis thaliana3E-2817739560 (0)_
AT1G72740.2 11Arabidopsis thaliana3E-0917229500 (0)_
AT1G72740.1 11Arabidopsis thaliana2E-0717829480 (0)_
Os01g51154.1 7Oryza sativa2E-0716226480 (0)_
Os01g51154.2 7Oryza sativa2E-0716226480 (0)_
Os01g51154.3 7Oryza sativa8E-0615326470 (0)_
GRMZM2G023667_P01 3.21Zea mays1E-1219028490 (0)_
Zm00001eb361200_P001 agpv5Zea mays1E-1219028490 (0)_
v1_GRMZM2G023667_P01 4a53Zea mays1E-1219028490 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Linker_histone(1)
TargetP: Cytoplasm (Class 2 C0.190; M0.083; S0.124; _0.844)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 229 aa (-cTP 207)
Molecular Weight 25.44 kDA(-cTP )
PI 4.34(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help