PPDB

PPDB	The Plant Proteome Database

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AT1G54080.1 oligouridylate-binding protein 1A

Lab Annot.

oligouridylate-binding protein 1A
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G54080.2 11 Arabidopsis thaliana 0 430 99 99 13 (11) M
AT3G14100.1 11 Arabidopsis thaliana 0 401 84 90 21 (16) M
AT1G17370.1 11 Arabidopsis thaliana 0 402 75 86 16 (11) M
Os07g42380.1 7 Oryza sativa 0 390 67 80 0 (0) M
Os11g40510.1 7 Oryza sativa 1E-179 384 66 79 0 (0) M
Os11g40510.2 7 Oryza sativa 5E-178 380 66 79 0 (0) M
Zm00001eb166710_P001 agpv5 Zea mays 0 411 66 78 0 (0) M
GRMZM5G835213_P02 3.21 Zea mays 0 411 66 78 0 (0) M
Zm00001eb166710_P002 agpv5 Zea mays 0 396 66 79 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	PHM7_cyt(3) RRM_1(3) RRM_3(2) RRM_5(2) RRM_7(2) RRM_occluded(3) SET_assoc(3)
TargetP:	Mitochondria (Class 2 C0.044; M0.921; S0.007; _0.188)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	426 aa (-cTP 363)
Molecular Weight	47.23 kDA(-cTP )
PI	6.67(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2182	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2183	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2184	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2185	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2247	Detail								seedlings [A. thaliana]	total tissue	atg5
2286	Detail								[A. thaliana]		Clp C1 WT
2287	Detail								[A. thaliana]		Clp C1 WT
2289	Detail								[A. thaliana]		Clp C1 TRAP
2290	Detail								[A. thaliana]		Clp C1 TRAP
2297	Detail								[A. thaliana]		Clp C1 WT
2300	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
18463617(suspension cells-phosphorylated proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19376835(leaf phosphoproteins)
21311031(chloroplasts)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data