PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G53830.1 pectin methylesterase 2

Lab Annot.

pectinesterase and invertase/pectin methylesterase inhibitor domain
Mapman: 10.8.1 cell wall.pectin*esterases.PME

Curated Location

TAIR curated location: cell wall (sensu Magnoliophyta)16287169

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G14310.1 11 Arabidopsis thaliana 0 600 78 86 439 (249) S
AT5G53370.1 11 Arabidopsis thaliana 1E-163 573 45 60 3 (0) _
AT5G53370.2 11 Arabidopsis thaliana 4E-163 573 45 60 0 (0) _
Os01g21034.1 7 Oryza sativa 5E-168 427 59 70 18 (18) _
Os07g47830.1 7 Oryza sativa 1E-166 524 48 63 0 (0) S
Os08g34900.1 7 Oryza sativa 5E-133 488 45 58 0 (0) S
Zm00001eb130500_P001 agpv5 Zea mays 9E-169 533 51 62 0 (0) S
Zm00001eb130500_P002 agpv5 Zea mays 9E-169 533 51 62 0 (0) S
v1_GRMZM2G136106_P01 4a53 Zea mays 9E-169 533 51 62 58 (58) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ETRAMP(2) Pectate_lyase_3(1) Pectinesterase(1) PMEI(1) s48_45(1)
TargetP:	Secreted (Class 5 C0.042; M0.043; S0.252; _0.143)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	587 aa (-cTP 508)
Molecular Weight	64.17 kDA(-cTP )
PI	9.08(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
1348	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 1)
1349	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 2)
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1423	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1446	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 2)
1448	Detail								leaf [A. thaliana]	total tissue (3 day HL)	abck2xabck3 (rep. 1)
1449	Detail								leaf [A. thaliana]	total tissue (3 day HL)	abck2xabck3 (rep. 2)
1450	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1611	Detail								leaf [A. thaliana]	chloroplast fractionation thylakoid membrane
2167	Detail								leaf [A. thaliana]	stroma Clp stroma	P3 trap-strepII
2182	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2183	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2184	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

18796151(cell wall (hypocotyl))
19334764(plasma membrane (cell culture))
20166762(whole leaf)
WallDB-E.Jamet(cell wall reference proteome)
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data