PPDB

PPDB	The Plant Proteome Database

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AT1G53820.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G72310.1 11 Arabidopsis thaliana 6E-72 324 42 56 0 (0) _
AT3G16720.1 11 Arabidopsis thaliana 3E-29 159 38 57 0 (0) _
AT3G14320.1 11 Arabidopsis thaliana 3E-27 177 40 51 0 (0) S
Os06g09310.1 7 Oryza sativa 8E-29 155 40 54 0 (0) _
Os11g02424.1 7 Oryza sativa 5E-22 85 51 63 0 (0) C
Os12g02350.1 7 Oryza sativa 1E-20 83 51 63 0 (0) _
v1_GRMZM2G478553_P01 4a53 Zea mays 2E-32 215 38 52 0 (0) _
GRMZM2G478553_P01 3.21 Zea mays 2E-32 215 38 52 0 (0) _
Zm00001eb374170_P001 agpv5 Zea mays 2E-32 215 38 52 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	FANCL_C(1) PHD(1) Prok-RING_1(2) Prok-RING_4(2) RINGv(1) zf-ANAPC11(1) zf-C3H2C3
TargetP:	Cytoplasm (Class 2 C0.010; M0.203; S0.029; _0.982)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	310 aa (-cTP 227)
Molecular Weight	34.83 kDA(-cTP )
PI	5.06(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data