PPDB

 The Plant Proteome Database

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AT1G53650.1   CTC-interacting domain 8
Lab Annot.
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G53650.2 11Arabidopsis thaliana031498980 (0)_
AT3G14450.1 11Arabidopsis thaliana5E-15432571790 (0)_
AT1G32790.1 11Arabidopsis thaliana2E-11927563730 (0)C
Os01g11120.1 7Oryza sativa6E-11627762751 (1)_
Os08g02330.1 7Oryza sativa3E-11029557670 (0)_
Os02g14760.1 7Oryza sativa9E-10921275860 (0)_
Zm00001eb260870_P005 agpv5Zea mays3E-10920772830 (0)_
Zm00001eb260870_P007 agpv5Zea mays3E-10920772830 (0)_
GRMZM2G173428_P01 3.21Zea mays1E-10820772831 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: LPD39(1) PAM2(1) RRM_1(3)
TargetP: Cytoplasm (Class 1 C0.104; M0.065; S0.086; _0.933)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 314 aa (-cTP 309)
Molecular Weight 34.68 kDA(-cTP )
PI 8.10(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help