PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G53400.1   Ubiquitin domain-containing protein

Lab Annot. Ubiquitin domain-containing protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G45740.1 11Arabidopsis thaliana4E-6011572860 (0)_
AT1G16960.1 11Arabidopsis thaliana1E-5511171890 (0)_
Os09g17620.1 7Oryza sativa3E-6211676860 (0)_
Os01g53079.1 7Oryza sativa2E-4211369800 (0)_
Os05g45320.2 7Oryza sativa3E-4211374870 (0)_
GRMZM2G101282_P04 3.21Zea mays4E-5811073870 (0)_
v1_GRMZM2G101282_P01 4a53Zea mays4E-5811073870 (0)_
Zm00001eb098410_P001 agpv5Zea mays7E-5711867800 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: UBD(1)
TargetP: Cytoplasm (Class 3 C0.201; M0.120; S0.087; _0.791)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 114 aa (-cTP 106)
Molecular Weight 12.71 kDA(-cTP )
PI 5.39(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help