PPDB

 The Plant Proteome Database

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AT1G53120.1   RNA-binding S4 domain-containing protein
Lab Annot. RNA-binding S4 domain-containing protein
Mapman: 27.4 RNA.RNA binding
Curated Location plastid (Pubmed: 23198870 18431481 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G53120.2 11Arabidopsis thaliana032099990 (0)M
Os01g54390.2 7Oryza sativa2E-13428564820 (0)M
Os01g54390.1 7Oryza sativa2E-13428564820 (0)M
Zm00001eb153060_P006 agpv5Zea mays1E-13928467820 (0)M
Zm00001eb153060_P001 agpv5Zea mays1E-13928467820 (0)M
Zm00001eb153060_P005 agpv5Zea mays1E-13928467820 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Flot(2) S4(1) YlmH_RBD(1)
TargetP: Mitochondria (Class 4 C0.170; M0.387; S0.097; _0.009)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 320 aa (-cTP 302)
Molecular Weight 34.55 kDA(-cTP )
PI 9.11(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
303Detail       leaf [A. thaliana] chloroplast stromawild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
420Detail       leaf [A. thaliana] chloroplast stromaclpR1-stop (EMS)
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
870Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2115Detail       leaf [A. thaliana] Stroma stromacGep
2222Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
21515685(GreenCut2)

Comparative Proteomics Data

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