PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G53070.1   Legume lectin family protein

Lab Annot. legume lectin protein
Mapman: 29.4 protein.postranslational modification
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G53080.1 11Arabidopsis thaliana5E-11628261770 (0)S
AT1G53060.1 11Arabidopsis thaliana4E-10524264800 (0)_
AT5G03350.1 11Arabidopsis thaliana7E-1042785771306 (102)S
Os03g15250.1 7Oryza sativa8E-4026732500 (0)S
Os07g03790.1 7Oryza sativa1E-3925035540 (0)S
Os07g03880.1 7Oryza sativa2E-3922338550 (0)S
Zm00001eb011240_P001 agpv5Zea mays5E-3827331500 (0)S
GRMZM2G337768_P01 3.21Zea mays1E-3722538530 (0)S
v1_GRMZM2G337768_P01 4a53Zea mays1E-3722538530 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Lectin_legB(1)
TargetP: Secreted (Class 1 C0.005; M0.025; S0.972; _0.110)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 272 aa (-cTP 188)
Molecular Weight 30.38 kDA(-cTP )
PI 8.49(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
2251Detail       seedlings [A. thaliana] total tissue wild-type
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

15593128(Cell Wall proteome)
15815986(Silique)
15815986(Leaf)
17526915(glycoproteome cell wall (stems))
18796151(cell wall (hypocotyl))
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
WallDB-E.Jamet(cell wall reference proteome)
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help