PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G52830.1   indole-3-acetic acid 6

Lab Annot. indole-3-acetic acid 6
Mapman: 27.3.40 RNA.regulation of transcription.Aux/IAA family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G15540.1 11Arabidopsis thaliana3E-7319761710 (0)_
AT1G15580.1 11Arabidopsis thaliana2E-4318550600 (0)_
AT5G43700.1 11Arabidopsis thaliana3E-4318748580 (0)_
Os03g43400.1 7Oryza sativa4E-3822540490 (0)_
Os05g14180.1 7Oryza sativa5E-3613150630 (0)_
Os03g53150.1 7Oryza sativa5E-3514247570 (0)_
GRMZM2G147243_P02 3.21Zea mays9E-4521043550 (0)_
Zm00001eb284310_P001 agpv5Zea mays9E-4521043550 (0)_
v1_GRMZM2G147243_P02 4a53Zea mays9E-4521043550 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: AUX_IAA(1)
TargetP: Cytoplasm (Class 2 C0.190; M0.070; S0.045; _0.845)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 189 aa (-cTP 161)
Molecular Weight 21.03 kDA(-cTP )
PI 6.41(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help