PPDB

 The Plant Proteome Database

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AT1G52740.1   histone H2A protein 9
Lab Annot. histone H2A, putative
Mapman: 28.1.3 DNA.synthesis/chromatin structure.histone
Curated Location nucleus
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G54560.1 11Arabidopsis thaliana3E-71136829116 (16)_
AT3G54560.2 11Arabidopsis thaliana3E-7113682910 (0)_
AT2G38810.3 11Arabidopsis thaliana6E-71136798814 (14)C
Os03g53190.2 7Oryza sativa6E-73137819061 (61)_
Os03g53190.1 7Oryza sativa6E-73137819061 (61)_
Os03g06670.1 7Oryza sativa3E-69138778761 (61)_
Zm00001eb004730_P001 agpv5Zea mays3E-7713882920 (0)_
GRMZM2G056231_P01 3.21Zea mays3E-771388292176 (176)_
v1_GRMZM2G056231_P01 4a53Zea mays3E-771388292217 (217)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CBFD_NFYB_HMF(1) Histone(1) Histone_H2A_C(1)
TargetP: Cytoplasm (Class 4 C0.402; M0.088; S0.009; _0.789)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 134 aa (-cTP 77)
Molecular Weight 14.27 kDA(-cTP )
PI 10.28(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1596Detail        [A. thaliana]  
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1613Detail       Natural Senescence leaf [A. thaliana]  
1617Detail        [A. thaliana] m48
1618Detail        [A. thaliana] m48
1619Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
1831Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Normal light
1832Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 15539469(vacuole)
18814325(cotyledons)
19525416(leaf (wt and clpr4-1 mutant))
19714877(interactomes 14-3-3 complexes (cell culture))
20706207(contaminants cell cycle interactome (cell culture))
20061580(chloroplast envelope (inner+outer))

Comparative Proteomics Data

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